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1

Efficient algorithms for the all-pairs suffix-prefix problem and the all-pairs substring-prefix problem

Enno Ohlebusch, Simon Gog

Journal:

Information Processing Letters

Year:

2010

Language:

english

File:

PDF, 237 KB

english, 2010

2

Computing the longest common prefix array based on the Burrows–Wheeler transform

Beller, Timo, Gog, Simon, Ohlebusch, Enno, Schnattinger, Thomas

Journal:

Journal of Discrete Algorithms

Year:

2013

Language:

english

File:

PDF, 302 KB

english, 2013

3

Computing the Burrows–Wheeler transform of a string and its reverse in parallel

Ohlebusch, Enno, Beller, Timo, Abouelhoda, Mohamed I.

Journal:

Journal of Discrete Algorithms

Year:

2014

Language:

english

File:

PDF, 415 KB

english, 2014

4

Modular Properties of Composable Term Rewriting Systems

Journal:

Journal of Symbolic Computation

Year:

1995

File:

PDF, 1.42 MB

1995

5

Modular Termination Proofs for Rewriting Using Dependency Pairs

Jürgen Giesl, Thomas Arts, Enno Ohlebusch

Journal:

Journal of Symbolic Computation

Year:

2002

Language:

english

File:

PDF, 524 KB

english, 2002

6

Termination is not modular for confluent variable-preserving term rewriting systems

Journal:

Information Processing Letters

Year:

1995

Language:

english

File:

PDF, 355 KB

english, 1995

7

On the modularity of termination of term rewriting systems

Journal:

Theoretical Computer Science

Year:

1994

Language:

english

File:

PDF, 1.43 MB

english, 1994

8

Conditional Term Graph Rewriting with Indirect Sharing

Journal:

Electronic Notes in Theoretical Computer Science

Year:

2007

Language:

english

File:

PDF, 336 KB

english, 2007

9

A linear time algorithm for the inversion median problem in circular bacterial genomes

Enno Ohlebusch, Mohamed I. Abouelhoda, Kathrin Hockel

Journal:

Journal of Discrete Algorithms

Year:

2007

Language:

english

File:

PDF, 275 KB

english, 2007

10

Hierarchical termination revisited

Journal:

Information Processing Letters

Year:

2002

Language:

english

File:

PDF, 98 KB

english, 2002

11

A uniform framework for term and graph rewriting applied to combined systems

Journal:

Information Processing Letters

Year:

2000

Language:

english

File:

PDF, 116 KB

english, 2000

12

Implementing conditional term rewriting by graph rewriting

Journal:

Theoretical Computer Science

Year:

2001

Language:

english

File:

PDF, 219 KB

english, 2001

13

On the equivalence problem for E-pattern languages

Enno Ohlebusch, Esko Ukkonen

Journal:

Theoretical Computer Science

Year:

1997

Language:

english

File:

PDF, 1.31 MB

english, 1997

14

Replacing suffix trees with enhanced suffix arrays

Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch

Journal:

Journal of Discrete Algorithms

Year:

2004

Language:

english

File:

PDF, 425 KB

english, 2004

15

Termination of Logic Programs: Transformational Methods Revisited

Journal:

Applicable Algebra in Engineering, Communication and Computing

Year:

2001

Language:

english

File:

PDF, 313 KB

english, 2001

16

Linear Time Algorithms for Generalizations of

Michael Arnold, Enno Ohlebusch

Journal:

Year:

2011

Language:

english

File:

PDF, 546 KB

english, 2011

17

A space efficient solution to the frequent string mining problem for many databases

Adrian Kügel, Enno Ohlebusch

Journal:

Data Mining and Knowledge Discovery

Year:

2008

Language:

english

File:

PDF, 310 KB

english, 2008

18

Chaining algorithms for multiple genome comparison

Mohamed Ibrahim Abouelhoda, Enno Ohlebusch

Journal:

Journal of Discrete Algorithms

Year:

2005

Language:

english

File:

PDF, 270 KB

english, 2005

19

Relative Undecidability in Term Rewriting: I. The Termination Hierarchy

Alfons Geser, Aart Middeldorp, Enno Ohlebusch, Hans Zantema

Journal:

Information and Computation

Year:

2002

Language:

english

File:

PDF, 243 KB

english, 2002

20

Relative Undecidability in Term Rewriting: II. The Confluence Hierarchy

Alfons Geser, Aart Middeldorp, Enno Ohlebusch, Hans Zantema

Journal:

Information and Computation

Year:

2002

Language:

english

File:

PDF, 142 KB

english, 2002

21

Bidirectional search in a string with wavelet trees and bidirectional matching statistics

Thomas Schnattinger, Enno Ohlebusch, Simon Gog

Journal:

Information and Computation

Year:

2012

Language:

english

File:

PDF, 267 KB

english, 2012

22

A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions

Martin Bader, Mohamed I Abouelhoda, Enno Ohlebusch

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 353 KB

english, 2008

23

Editorial: Software survey section

Beller, Timo, Gog, Simon, Ohlebusch, Enno, Schnattinger, Thomas

Journal:

Research in Developmental Disabilities

Year:

1992

Language:

english

File:

PDF, 89 KB

english, 1992

24

Sorting by Weighted Reversals, Transpositions, and Inverted Transpositions

Bader, Martin, Ohlebusch, Enno

Journal:

Journal of Computational Biology

Year:

2007

Language:

english

File:

PDF, 742 KB

english, 2007

25

Space Efficient Computation of Rare Maximal Exact Matches between Multiple Sequences

Ohlebusch, Enno, Kurtz, Stefan

Journal:

Journal of Computational Biology

Year:

2008

Language:

english

File:

PDF, 262 KB

english, 2008

26

GENESIS: genome evolution scenarios

Gog, S., Bader, M., Ohlebusch, E.

Journal:

Year:

2008

Language:

english

File:

PDF, 177 KB

english, 2008

27

Efficient multiple genome alignment

Hohl, M., Kurtz, S., Ohlebusch, E.

Journal:

Year:

2002

Language:

english

File:

PDF, 178 KB

english, 2002

28

Compressed suffix trees

Gog, Simon, Ohlebusch, Enno

Journal:

Journal of Experimental Algorithmics

Year:

2013

Language:

english

File:

PDF, 611 KB

english, 2013

29

Alphabet-independent algorithms for finding context-sensitive repeats in linear time

E. Ohlebusch, T. Beller

Year:

2015

Language:

english

File:

PDF, 425 KB

english, 2015

30

Graphical pan-genome analysis with compressed suffix trees and the Burrows-Wheeler transform

Baier, Uwe, Beller, Timo, Ohlebusch, Enno

Journal:

Year:

2015

Language:

english

File:

PDF, 175 KB

english, 2015

31

CoCoNUT: an efficient system for the comparison and analysis of genomes

Abouelhoda, Mohamed I, Kurtz, Stefan, Ohlebusch, Enno

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.12 MB

english, 2008

32

Space-Efficient Parallel Construction of Succinct Representations of Suffix Tree Topologies

Baier, Uwe, Beller, Timo, Ohlebusch, Enno

Journal:

Journal of Experimental Algorithmics

Year:

2017

Language:

english

File:

PDF, 1.30 MB

english, 2017

33

A representation of a compressed de Bruijn graph for pan-genome analysis that enables search

Timo Beller,Enno Ohlebusch

Journal:

Algorithms for Molecular Biology

Year:

2016

Language:

english

File:

PDF, 2.41 MB

english, 2016

34

Relative Undecidability in Term RewritingII. The Confluence Hierarchy

GESER, A, MIDDELDORP, A, OHLEBUSCH, E, ZANTEMA, H

Journal:

Information and Computation

Year:

2002

Language:

english

File:

PDF, 142 KB

english, 2002

35

Relative Undecidability in Term RewritingI. The Termination Hierarchy

GESER, A, MIDDELDORP, A, OHLEBUSCH, E, ZANTEMA, H

Journal:

Information and Computation

Year:

2002

Language:

english

File:

PDF, 243 KB

english, 2002

36

Genlight: Interactive high-throughput sequence analysis and comparative genomics

Beckstette, Michael, Mailänder, Jens T., Marhöfer, Richard J., Sczyrba, Alexander, Ohlebusch, Enno, Giegerich, Robert, Selzer, Paul M.

Journal:

Journal of Integrative Bioinformatics

Year:

2004

Language:

english

File:

PDF, 932 KB

english, 2004

37

[IEEE 2020 Data Compression Conference (DCC) - Snowbird, UT, USA (2020.3.24-2020.3.27)] 2020 Data Compression Conference (DCC) - Edge Minimization in de Bruijn Graphs

Baier, Uwe, Buchler, Thomas, Ohlebusch, Enno, Weber, Pascal

Year:

2020

File:

PDF, 173 KB

2020

38

Investigation of alpl expression and Tnap-activity in zebrafish implies conserved functions during skeletal and neuronal development

Ohlebusch, Barbara, Borst, Angela, Frankenbach, Tina, Klopocki, Eva, Jakob, Franz, Liedtke, Daniel, Graser, Stephanie

Journal:

Scientific Reports

Year:

2020

File:

PDF, 5.82 MB

2020